Partner ecosystem

Affiliated Apps

These projects are not directly maintained by the OpenMS team but are dependent on OpenMS infrastructure or funding.

  • mzPeak

    Next generation file format for mass spectrometry run files, built on top of Apache Parquet

    Maintainers Joshua Klein, Sam Wein, Tim Van Den Bossche, Peter Jones, Oliver Kohlbacher

  • QuantMS

    An open-source ecosystem for large-scale quantitative proteomics.

    Maintainers Yasset Perez-Riverol, Mingze Bai, Timo Sachsenberg, Chengxin Dai, Julianus Pfeuffer

  • Casanovo

    De Novo Mass Spectrometry Peptide Sequencing with a Transformer Model

    Maintainers Wout Bittremieux, Bill Noble

  • easypqp

    Spectral library generation tool for DIA.

    Maintainers Justin Sing

  • Pyprophet

    Semi-supervised learning and scoring of OpenSWATH results

    Maintainers Justin Sing

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