pyopenms_viz
Seamless plotting directly from pandas dataframes.
Create spectra, chromatograms, and more from just a single line of code. df.plot()
-
DataFrame-native
Plot directly from pandas with df.plot()
-
Mass spec plots
Spectra, chromatograms, and peak maps
-
Multiple backends
Matplotlib, Bokeh, and Plotly
-
One-line API
Publication-ready figures from a single call
Get started
Explore pyopenms_viz
Documentation and resources to start plotting with pyopenms_viz.
-
Gallery
Plotting Gallery
Browse example plots for spectra, chromatograms, and more.
Browse gallery -
Install
Installation
Install pyopenms_viz and start plotting from pandas DataFrames.
Install now -
Docs
Documentation
Guides and tutorials to help you get productive quickly.
Open docs -
API
API Reference
Full class and method reference for plot types and customization.
View reference -
pyOpenMS
Python bindings
Use OpenMS algorithms and data structures directly from Python.
Explore pyOpenMS
For Developers
Contribute
Help improve visualization for the OpenMS ecosystem — report issues, extend plot types, and share examples.
Report an Issue
Report bugs or request new plot types on GitHub.
Open on GitHubContribute on GitHub
Browse the source, open pull requests, and share examples.
View repositoryReviewing Pull Requests
Help move contributions forward by reviewing open pull requests on GitHub.
Research impact